1JYR

Xray Structure of Grb2 SH2 Domain Complexed with a Phosphorylated Peptide

Structural Biology Knowledgebase: 1JYR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JYR

Classification: SIGNALING PROTEIN / INHIBITOR

Total Structure Weight: 12142.75

Macromolecule Entities
Molecule Chains Length Organism Details
GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 A 96 Homo sapiens Fragment: SH2 Domain
Gene Name(s): GRB2 Gene View ASH
peptide: PSpYVNVQN L 9 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
L L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.80 α = 90.00
b = 50.80 β = 90.00
c = 89.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-13
  • Released Date: 2002-03-13
  • Deposition author(s): Nioche, P., Liu, W.-Q., Broutin, I., Charbonnier, F., Latreille, M.-T., Vidal, M., Roques, B., Garbay, C., Ducruix, A.

Revision History

  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords