1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY

Structural Biology Knowledgebase: 1JGP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 7.0 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JGP

Classification: RIBOSOME

Total Structure Weight: 869039.44


Macromolecule Entities
Molecule Chains Length Organism Details
30S RIBOSOMAL PROTEIN S2 E 256 Thermus thermophilus Gene Name(s): rpsB rps2 TTHA0861
30S RIBOSOMAL PROTEIN S3 F 239 Thermus thermophilus
30S RIBOSOMAL PROTEIN S4 G 209 Thermus thermophilus Gene Name(s): rpsD rps4 TTHA1665
30S RIBOSOMAL PROTEIN S5 H 162 Thermus thermophilus Gene Name(s): rpsE TTHA1675
30S RIBOSOMAL PROTEIN S6 I 101 Thermus thermophilus Gene Name(s): rpsF TTHA0245
30S RIBOSOMAL PROTEIN S7 J 156 Thermus thermophilus Gene Name(s): rpsG rps7 TTHA1696
30S RIBOSOMAL PROTEIN S8 K 138 Thermus thermophilus Gene Name(s): rpsH TTHA1678
30S RIBOSOMAL PROTEIN S9 L 128 Thermus thermophilus Gene Name(s): rpsI rps9 TTHA1464
30S RIBOSOMAL PROTEIN S10 M 105 Thermus thermophilus Gene Name(s): rpsJ TTHA1693
30S RIBOSOMAL PROTEIN S11 N 129 Thermus thermophilus Gene Name(s): rpsK rps11 TTHA1666
30S RIBOSOMAL PROTEIN S12 O 135 Thermus thermophilus Gene Name(s): rpsL TTHA1697
30S RIBOSOMAL PROTEIN S13 P 126 Thermus thermophilus Gene Name(s): rpsM rps13 TTHA1667
30S RIBOSOMAL PROTEIN S14 Q 61 Thermus thermophilus Gene Name(s): rpsZ rpsN TTHA1679
30S RIBOSOMAL PROTEIN S15 R 89 Thermus thermophilus Gene Name(s): rpsO TTHA1138
30S RIBOSOMAL PROTEIN S16 S 91 Thermus thermophilus Gene Name(s): rpsP TTHA1035
30S RIBOSOMAL PROTEIN S17 T 105 Thermus thermophilus Gene Name(s): rpsQ TTHA1683
30S RIBOSOMAL PROTEIN S18 U 88 Thermus thermophilus Gene Name(s): rpsR TTHA0243
30S RIBOSOMAL PROTEIN S19 V 93 Thermus thermophilus Gene Name(s): rpsS TTHA1688
30S RIBOSOMAL PROTEIN S20 W 106 Thermus thermophilus Gene Name(s): rpsT rps20 TTHA1397
30S RIBOSOMAL PROTEIN THX X 26 Thermus thermophilus Gene Name(s): rpsU TTHA1396
Macromolecule Entities
Molecule Chains Length Organism Details
30S 16S ribosomal RNA A 1522 Thermus thermophilus
tRNA(Phe) B, C 76 synthetic A-site tRNA chain B, P-site tRNA chain C
tRNA(Phe) D 74 synthetic E-site tRNA
MESSENGER RNA MV36 1 36 synthetic 36 nt long mRNA fragment. The actual sequence GGCAAGGAGGUAAAA AUGGUA AAACGUAAAUCAACU modeled as GGCAAGGAGGUAAAA UUUUUU AAACGUAAAUCAACU

Small Molecules
Modified Residues 12 Unique
ID Chains Type Formula 2D Diagram Parent
2MG
Query on 2MG
B, C RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
B, C, D RNA LINKING C9 H15 N2 O9 P U
M2G
Query on M2G
B, C RNA LINKING C12 H18 N5 O8 P G
OMC
Query on OMC
B, C RNA LINKING C10 H16 N3 O8 P C
OMG
Query on OMG
B, C RNA LINKING C11 H16 N5 O8 P G
YG
Query on YG
B, C RNA LINKING C21 H29 N6 O12 P G
PSU
Query on PSU
B, C, D RNA LINKING C9 H13 N2 O9 P U
5MC
Query on 5MC
B, C, D RNA LINKING C10 H16 N3 O8 P C
7MG
Query on 7MG
B, C RNA LINKING C11 H18 N5 O8 P G
5MU
Query on 5MU
B, C, D RNA LINKING C10 H15 N2 O9 P U
1MA
Query on 1MA
B, C RNA LINKING C11 H16 N5 O7 P A
4SU
Query on 4SU
D RNA LINKING C9 H13 N2 O8 P S U

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 7.0 Å
  • R-Value Observed:
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 507.20 α = 90.00
b = 507.20 β = 90.00
c = 803.66 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-06-26
  • Released Date: 2001-07-20
  • Deposition author(s): Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4