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FERULOYL ESTERASE DOMAIN OF XYNY FROM CLOSTRIDIUM THERMOCELLUM
1GKK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 69749.99
    Molecule: ENDO-1,4-BETA-XYLANASE Y
    Polymer: 1 Type: protein Length: 297
    Chains: A, B
    EC#: 3.2.1.8   
    Fragment: FERULOYL ESTERASE DOMAIN RESIDUES 792-1077
    Organism: Ruminiclostridium thermocellum
    Gene Name: xynY
    UniProtKB: Protein Feature View | Search PDB | P51584  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Clostridium thermocellum   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1DYO  XYLAN-BINDING DOMAIN FROM CBM 22, FORMALLY X6B DOMAIN 
    1GKL  S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM THERMOCELLUM COMPLEXED WITH FERULIC ACID 
    1H6X  THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM XYN10B IN LIGAND BINDING 
    1H6Y  THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM XYN10B IN LIGAND BINDING 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CD
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    CD Cd
    CADMIUM ION
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE
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    MSE C5 H11 N O2 Se MET lPeptideLinking
    SEP
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    SEP C3 H8 N O6 P SER lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Prates, J.A.M.,  Tarbouriech, N.,  Charnock, S.J.,  Fontes, C.M.G.A.,  Ferreira, L.M.A.,  Davies, G.J.

    Deposition:   2001-08-15
    Release:   2001-12-13
    Last Modified (REVDAT):   2011-09-07
     
  •   Revision History    Hide
    Mouse over text for details
    2011-09-07
    Function and keywords
    2011-09-07
    Sequence database correspondence
    2011-09-07
    Data collection
    2011-09-07
    Non-polymer description
    2011-09-07
    Linkage
    2011-09-07
    Version format compliance
    2011-09-07
    Refinement description
    2011-09-07
    Other
    2011-09-07
    Atom nomenclature
    2011-09-07
    Biological assembly
    2011-09-07
    Geometry validation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.60
    R-Value: 0.155 (obs.)
    R-Free: 0.173
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.38 α = 90.00 
    b = 108.79 β = 90.00 
    c = 113.88 γ = 90.00