1F3J

HISTOCOMPATIBILITY ANTIGEN I-AG7

Structural Biology Knowledgebase: 1F3J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F3J

Classification: IMMUNE SYSTEM

Total Structure Weight: 90616.04

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN A, D 182 Mus musculus Fragment: A-D ALPHA CHAIN
Gene Name(s): H2-Aa
MHC CLASS II NOD B, E 187 Mus musculus Fragment: BETA CHAIN
LYSOZYME C P, Q 14 Gallus gallus EC#: 3.2.1.17 IUBMB
Fragment: RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, D, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.221
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 109.54 α = 90.00
b = 109.54 β = 90.00
c = 176.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-04
  • Released Date: 2000-09-20
  • Deposition author(s): Latek, R.R., Unanue, E.R., Fremont, D.H.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4