HISTOCOMPATIBILITY ANTIGEN I-AG7
1F3J
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 90616.04
    Molecule: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN
    Polymer: 1 Type: protein Length: 182
    Chains: A, D
    Fragment: A-D ALPHA CHAIN
    Organism: Mus musculus
    Gene Name: H2-Aa
    UniProtKB: Protein Feature View | Search PDB | P04228  
    Molecule: MHC CLASS II NOD
    Polymer: 2 Type: protein Length: 187
    Chains: B, E
    Fragment: BETA CHAIN
    Organism: Mus musculus
    Gene Name: H2-Ab1
    UniProtKB: Protein Feature View | Search PDB | Q31135  
    Molecule: LYSOZYME C
    Polymer: 3 Type: protein Length: 14
    Chains: P, Q
    EC#: 3.2.1.17   
    Fragment: RESIDUES 11-24, CORRESPOND TO BINDING SITES P-3 TO P11
    Organism: Gallus gallus
    Gene Name: Gene View for LYZ
    UniProtKB: Protein Feature View | Search PDB | P00698  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Spodoptera frugiperda  
    Polymer: 3
    Scientific Name: Gallus gallus   Taxonomy   Common Name: Chicken Expression System: Spodoptera frugiperda  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    NAG:1F3J
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Latek, R.R.,  Unanue, E.R.,  Fremont, D.H.

    Deposition:   2000-06-04
    Release:   2000-09-20
    Last Modified (REVDAT):   2011-11-16
     
  •   Revision History    Hide
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    2011-11-16
    Atom occupancy
    2011-07-13
    Version format compliance
    2011-07-13
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.10
    R-Value: 0.221 (obs.)
    R-Free: 0.299
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 109.54 α = 90.00 
    b = 109.54 β = 90.00 
    c = 176.36 γ = 90.00