1DV4

PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS

Structural Biology Knowledgebase: 1DV4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.5 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DV4

Classification: RIBOSOME

Total Structure Weight: 105889.11


Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL PROTEIN S5 E 145 Geobacillus stearothermophilus Fragment: RESIDUES 4-148
Gene Name(s): rpsE
RIBOSOMAL PROTEIN S7 G 135 Thermus thermophilus Fragment: RESIDUES 12-146
Gene Name(s): rpsG rps7 TTHA1696
Macromolecule Entities
Molecule Chains Length Organism Details
16S RIBOSOMAL RNA A 362 Thermus thermophilus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WO2
Query on WO2

E OCTADECATUNGSTENYL DIPHOSPHATE
O62 P2 W18
WXCYUHHUPKCTBX-HWHNUBGVCD
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
N
Query on N
A RNA LINKING C5 H11 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.5 Å
  • R-Value Observed:
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 407.10 α = 90.00
b = 407.10 β = 90.00
c = 176.01 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-01-19
  • Released Date: 2000-02-02
  • Deposition author(s): Tocilj, A., Schlunzen, F., Janell, D., Gluhmann, M., Hansen, H., Harms, J., Bashan, A., Bartels, H., Agmon, I., Franceschi, F., Yonath, A.
  • Previous versions: 1C59

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4