1D7E

CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN

Structural Biology Knowledgebase: 1D7E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.139

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1D7E

Classification: PHOTOSYNTHESIS

Total Structure Weight: 13654.36

Macromolecule Entities
Molecule Chains Length Organism Details
PHOTOACTIVE YELLOW PROTEIN A 122 Halorhodospira halophila Gene Name(s): pyp

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HC4
Query on HC4

A 4'-HYDROXYCINNAMIC ACID
PARA-COUMARIC ACID (Synonym)
C9 H8 O3
NGSWKAQJJWESNS-ZZXKWVIFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.139
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 40.56 α = 90.00
b = 40.56 β = 90.00
c = 118.09 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-17
  • Released Date: 2000-03-31
  • Deposition author(s): Van Aalten, D.M.F., Crielaard, W., Hellingwerf, K.J., Joshua-Tor, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4