1C1C

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH TNK-6123

Structural Biology Knowledgebase: 1C1C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1C1C

Classification: TRANSFERASE

Total Structure Weight: 116321.75

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN) A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P66
Mutation: C280X
Gene Name(s): gag-pol
HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN) B 440 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P51
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
612
Query on 612

A 6-(cyclohexylsulfanyl)-1-(ethoxymethyl)-5- (1-methylethyl)pyrimidine-2,4(1H,3H)-dione
TNK-6123 (Synonym)
C16 H26 N2 O3 S
JKXLRLDPSLZEDD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
612 EC50: 12 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.232
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.80 α = 90.00
b = 109.50 β = 90.00
c = 71.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-21
  • Released Date: 2000-07-21
  • Deposition author(s): Hopkins, A.L., Ren, J., Tanaka, H., Baba, M., Okamato, M., Stuart, D.I., Stammers, D.K.

Revision History

  • 2014-11-12
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4