9LYZ

X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME

Structural Biology Knowledgebase: 9LYZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 9LYZ

Classification: HYDROLASE (O-GLYCOSYL)

Total Structure Weight: 15102.93

Macromolecule Entities
Molecule Chains Length Organism Details
HEN EGG WHITE LYSOZYME A 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMU
Query on AMU

A BETA-N-ACETYLMURAMIC ACID
C11 H19 N O8
MNLRQHMNZILYPY-YVNCZSHWSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed:
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 78.97 α = 90.00
b = 78.97 β = 90.00
c = 38.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1979-12-06
  • Released Date: 1980-02-27
  • Deposition author(s): Kelly, J.A., James, M.N.G.

Revision History

  • 2011-07-27
    Type: Other | Details: complete coordinates
  • 2011-07-27
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4