8ES5

Aha1 domain protein from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Lack of evidence that Pseudomonas aeruginosa AmpDh3-PA0808 constitute a type VI secretion system effector-immunity pair.

Colautti, J.Bullen, N.P.Whitney, J.C.

(2023) Mol Microbiol 119: 262-274

  • DOI: https://doi.org/10.1111/mmi.15021
  • Primary Citation of Related Structures:  
    8ES5

  • PubMed Abstract: 

    Type VI secretion systems (T6SSs) are cell envelope-spanning protein complexes that Gram-negative bacteria use to inject a diverse arsenal of antibacterial toxins into competitor cells. Recently, Wang et al. reported that the H2-T6SS of Pseudomonas aeruginosa delivers the peptidoglycan recycling amidase, AmpDh3, into the periplasm of recipient cells where it is proposed to act as a peptidoglycan degrading toxin. They further reported that PA0808, the open reading frame downstream of AmpDh3, encodes an immunity protein that localizes to the periplasm where it binds to and inactivates intercellularly delivered AmpDh3, thus protecting against its toxic activity. Given that AmpDh3 has an established role in cell wall homeostasis and that no precedent exists for cytosolic enzymes moonlighting as T6SS effectors, we attempted to replicate these findings. We found that cells lacking PA0808 are not susceptible to bacterial killing by AmpDh3 and that PA0808 and AmpDh3 do not physically interact in vitro or in vivo. Additionally, we found no evidence that AmpDh3 is exported from cells, including by strains with a constitutively active H2-T6SS. Finally, subcellular fractionation experiments and a 1.97 Å crystal structure reveal that PA0808 does not contain a canonical signal peptide or localize to the correct cellular compartment to confer protection against a cell wall targeting toxin. Taken together, these results cast doubt on the assertion that AmpDh3-PA0808 constitutes an H2-T6SS effector-immunity pair.


  • Organizational Affiliation

    Michael DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Activator of HSP90 ATPase
A, B
165Pseudomonas aeruginosa PA14Mutation(s): 0 
Gene Names: 
ALP65_01635CAZ10_12280CGU42_24225E4V10_11310E5D53_09975ECC04_025130GNQ48_22815GUL26_32225IPC112_06470IPC113_16175IPC114_06300IPC115_16635IPC116_21530IPC117_23830IPC118_24885IPC119_22090IPC120_22920IPC121_15885IPC122_14240IPC123_21595IPC127_17080IPC128_12580IPC129_14830IPC1307_08390IPC130_15985IPC1311_05030IPC1312_10265IPC1313_09265IPC1315_09230IPC1316_28620IPC1318_20315IPC1321_08970IPC1322_23855IPC1323_24425IPC1324_24975IPC1325_28310IPC1326_26955IPC1327_26965IPC1328_11460IPC1330_07965IPC1331_14515IPC1332_07915IPC1333_12745IPC1334_21705IPC1335_20030IPC1337_13565IPC1338_13970IPC1339_06105IPC1340_00685IPC1342_19940IPC1343_23115IPC1345_07245IPC1346_03305IPC1347_03310IPC1348_06420IPC1349_24410IPC137_09075IPC141_05605IPC142_12970IPC143_04165IPC1474_08160IPC1479_23100IPC1480_20605IPC1481_16240IPC1482_22755IPC1485_20645IPC1486_21520IPC1487_28555IPC1488_18465IPC1489_25745IPC1490_13950IPC1491_29690IPC1492_10880IPC1494_24870IPC1496_28030IPC1498_25975IPC1499_25640IPC1502_29775IPC1505_22755IPC1506_24185IPC1507_30140IPC1508_08890IPC1509_23845IPC1510_21680IPC1511_24065IPC1514_13215IPC1515_30070IPC1516_27955IPC1518_25615IPC1519_18350IPC1520_08810IPC1521_25625IPC1522_17760IPC1523_10175IPC1583_13105IPC1584_18345IPC1586_03650IPC1588_18095IPC1591_24450IPC1593_10200IPC1594_13515IPC1595_12975IPC1600_24650IPC1603_10275IPC1605_09630IPC1606_09440IPC161_18185IPC162_05305IPC163_12725IPC164_03985IPC165_12730IPC166_14020IPC167_12325IPC168_09035IPC169_12725IPC170_03985IPC171_03270IPC177_20875IPC179_27280IPC180_28275IPC181_29790IPC184_20490IPC26_11900IPC29_03355IPC30_27755IPC31_29355IPC32_19700IPC34_03630IPC35_03625IPC36_07965IPC37_27065IPC38_26825IPC41_08615IPC42_15275IPC43_05745IPC44_00745IPC45_00440IPC46_12970IPC47_09240IPC48_17305IPC49_09655IPC50_11900IPC51_17245IPC56_22035IPC574_22770IPC575_22565IPC576_10805IPC577_20560IPC578_20915IPC579_18565IPC57_23835IPC580_19845IPC582_21405IPC584_19435IPC586_09710IPC589_06135IPC58_23240IPC596_15625IPC597_18725IPC598_15335IPC599_12975IPC600_15765IPC601_18060IPC602_15630IPC603_24215IPC604_25550IPC605_21230IPC606_28855IPC607_17200IPC608_16940IPC609_08050IPC610_20280IPC611_25060IPC612_29200IPC613_08965IPC614_25830IPC615_04710IPC616_29805IPC618_12735IPC61_15960IPC620_07365IPC621_16340IPC622_13980IPC623_23800IPC624_25875IPC625_17455IPC627_19330IPC629_16435IPC630_18315IPC632_18900IPC633_13010IPC634_20820IPC737_22890IPC73_23080IPC74_22410IPC75_00435IPC76_01485IPC77_21055IPC78_18935NCTC13621_07392PA52Ts2_1801PAMH19_4109

UniProt
Find proteins for A0A0H2Z732 (Pseudomonas aeruginosa (strain UCBPP-PA14))
Explore A0A0H2Z732 
Go to UniProtKB:  A0A0H2Z732
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H2Z732
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.25α = 90
b = 80.77β = 90
c = 161.6γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
autoPROCdata reduction
autoPROCdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT-175011

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release
  • Version 1.1: 2023-03-22
    Changes: Database references
  • Version 1.2: 2023-10-25
    Changes: Data collection, Refinement description