830C

COLLAGENASE-3 (MMP-13) COMPLEXED TO A SULPHONE-BASED HYDROXAMIC ACID


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 830C

Classification: MATRIX METALLOPROTEASE

Total Structure Weight: 39011.71

Macromolecule Entities
Molecule Chains Length Organism Details
MMP-13 A, B 168 Homo sapiens EC#: 3.4.24 IUBMB
Fragment: CATALYTIC DOMAIN
Details: CATALYTIC DOMAIN IS COMPLEXED WITH A DIPHENYL-ETHER, SULPHONE INHIBITOR
Gene Name(s): MMP13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RS1
Query on RS1

A, B 4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]- TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE
C19 H20 Cl N O6 S
ROSNVSQTEGHUKU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RS1 IC50: 0.01 - 34 nM (100) BindingDB
Ki: 0.28 - 0.6 nM (100) BindingDB

Ki: 0.52 nM  BindingMOAD
Ki: 0.52 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.208
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 136.07 α = 90.00
b = 36.10 β = 131.06
c = 96.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-06
  • Released Date: 1999-08-06
  • Deposition author(s): Lovejoy, B., Welch, A., Carr, S., Luong, C., Broka, C., Hendricks, R.T., Campbell, J., Walker, K., Martin, R., Van Wart, H., Browner, M.F.

Revision History

  • Version 1_0: 1999-08-06

    Type: Initial release

  • Version 1_1: 2008-03-03

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance