7Z3S

CRYSTAL STRUCTURE of PheF from Geobacillus stearothermophilus

PDB DOI: https://doi.org/10.2210/pdb7Z3S/pdb

Classification: LYASE
Organism(s): Geobacillus stearothermophilus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-03-02 Released: 2023-01-11
Deposition Author(s): Driller, R., Haack, M., Brueck, T., Loll, B.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.210
R-Value Work: 0.181
R-Value Observed: 0.183

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

CRYSTAL STRUCTURE OF THE P1 trifluoroethylglycine (TfeGly) BPTI MUTANT- BOVINE CHYMOTRYPSIN COMPLEX

Leppkes, J., Wehrhan, L., Dimos, N., Loll, B., Hohmann, T., Dyrks, M., Wieseke, A., Wahl, M.C., Keller, B.G., Koksch, B.

To be published.

Macromolecule Content

Total Structure Weight: 32.16 kDa
Atom Count: 2,309
Modelled Residue Count: 292
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetaldehyde dehydrogenase	A	298	Geobacillus stearothermophilus	Mutation(s): 0 Gene Names: pheF EC: 1.2.1.10
UniProt
Find proteins for B0VXM6 (Geobacillus stearothermophilus) Explore B0VXM6 Go to UniProtKB: B0VXM6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B0VXM6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A]	B [auth A], C [auth A], D [auth A]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.210
R-Value Work: 0.181
R-Value Observed: 0.183
Space Group: P 4₃
Diffraction Data: https://doi.org/10.18430/M37Z3S

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.25	α = 90
b = 69.25	β = 90
c = 88.4	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-01-11
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.