Download Mendeleycrystal structure of Csn-PD from Paenibacillus dendritiformis
Sun, H.H., Cheng, Y.M., Cao, R., Liu, Q., Zhao, L.To be published.
7XH0
crystal structure of Csn-PD from Paenibacillus dendritiformis
- PDB DOI: https://doi.org/10.2210/pdb7XH0/pdb
- Classification: HYDROLASE
- Organism(s): Paenibacillus dendritiformis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-04-07 Released: 2022-06-08
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.195
- R-Value Work: 0.150
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chitosanase | 308 | Paenibacillus dendritiformis | Mutation(s): 0 Gene Names: DOE73_06680 EC: 3.2.1.132 |  | |
UniProt | |||||
Find proteins for H3SPM3 (Paenibacillus dendritiformis C454) Explore H3SPM3 Go to UniProtKB: H3SPM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H3SPM3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC Query on FLC | B [auth A] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.195
- R-Value Work: 0.150
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.51 | α = 90 |
| b = 73.138 | β = 90 |
| c = 99.975 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-06-08 Deposition Author(s): Sun, H.H., Cheng, Y.M., Cao, R., Liu, Q., Zhao, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 31801574 |
Revision History (Full details and data files)
- Version 1.0: 2022-06-08
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Derived calculations, Refinement description
