7S58

Crystal Structure of the tick evasin EVA-P974 complexed to human chemokine CCL7


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure-guided engineering of tick evasins for targeting chemokines in inflammatory diseases.

Bhusal, R.P.Aryal, P.Devkota, S.R.Pokhrel, R.Gunzburg, M.J.Foster, S.R.Lim, H.D.Payne, R.J.Wilce, M.C.J.Stone, M.J.

(2022) Proc Natl Acad Sci U S A 119

  • DOI: https://doi.org/10.1073/pnas.2122105119
  • Primary Citation of Related Structures:  
    7S4N, 7S58, 7S59, 7S5A, 7SO0

  • PubMed Abstract: 

    As natural chemokine inhibitors, evasin proteins produced in tick saliva are potential therapeutic agents for numerous inflammatory diseases. Engineering evasins to block the desired chemokines and avoid off-target side effects requires structural understanding of their target selectivity. Structures of the class A evasin EVA-P974 bound to human CC chemokine ligands 7 and 17 (CCL7 and CCL17) and to a CCL8-CCL7 chimera reveal that the specificity of class A evasins for chemokines of the CC subfamily is defined by conserved, rigid backbone-backbone interactions, whereas the preference for a subset of CC chemokines is controlled by side-chain interactions at four hotspots in flexible structural elements. Hotspot mutations alter target preference, enabling inhibition of selected chemokines. The structure of an engineered EVA-P974 bound to CCL2 reveals an underlying molecular mechanism of EVA-P974 target preference. These results provide a structure-based framework for engineering evasins as targeted antiinflammatory therapeutics.


  • Organizational Affiliation

    Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia; ram.bhusal@monash.edu martin.stone@monash.edu.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Evasin P974
A, B, C, D
85Amblyomma cajennenseMutation(s): 0 
UniProt
Find proteins for A0A023FDY8 (Amblyomma cajennense)
Explore A0A023FDY8 
Go to UniProtKB:  A0A023FDY8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A023FDY8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C-C motif chemokine 7E,
F,
G [auth J],
H
76Homo sapiensMutation(s): 0 
Gene Names: CCL7MCP3SCYA6SCYA7
UniProt & NIH Common Fund Data Resources
Find proteins for P80098 (Homo sapiens)
Explore P80098 
Go to UniProtKB:  P80098
PHAROS:  P80098
GTEx:  ENSG00000108688 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP80098
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.025α = 90
b = 64.415β = 90
c = 181.432γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)Australia--

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-16
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description