7PLR

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir

PDB DOI: https://doi.org/10.2210/pdb7PLR/pdb

Classification: TRANSFERASE
Organism(s): La Crosse virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-09-01 Released: 2022-09-14
Deposition Author(s): Feracci, M., Hernandez, S., Vincentelli, R., Ferron, F., Reguera, J., Canard, B., Alvarez, K.
Funding Organization(s): Agence Nationale de la Recherche (ANR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å
R-Value Free: 0.254
R-Value Work: 0.214

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound Baloxavir

Feracci, M., Hernandez, S., Vincentelli, R., Ferron, F., Reguera, J., Canard, B., Alvarez, K.

To be published.

Macromolecule Content

Total Structure Weight: 89.17 kDa
Atom Count: 6,391
Modelled Residue Count: 736
Deposited Residue Count: 736
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase L	A [auth AAA], B [auth BBB], C [auth DDD], D [auth GGG]	184	La Crosse virus	Mutation(s): 0 EC: 2.7.7.48 (PDB Primary Data), 3.1 (PDB Primary Data)
UniProt
Find proteins for A5HC98 (Bunyavirus La Crosse) Explore A5HC98 Go to UniProtKB: A5HC98
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A5HC98
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
E4Z (Subject of Investigation/LOI) Query on E4Z Download Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain O [auth DDD] SDF format, chain S [auth GGG] MOL2 format, chain E [auth AAA] MOL2 format, chain O [auth DDD] MOL2 format, chain S [auth GGG]	E [auth AAA], O [auth DDD], S [auth GGG]	Baloxavir acid C₂₄ H₁₉ F₂ N₃ O₄ S FIDLLEYNNRGVFR-CTNGQTDRSA-N		Interactions Focus chain E [auth AAA] Focus chain O [auth DDD] Focus chain S [auth GGG] Interactions & Density Focus chain E [auth AAA] Focus chain O [auth DDD] Focus chain S [auth GGG]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain G [auth AAA] MOL2 format, chain G [auth AAA]	G [auth AAA]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain G [auth AAA] Interactions & Density Focus chain G [auth AAA]
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain I [auth AAA] SDF format, chain J [auth AAA] SDF format, chain K [auth AAA] SDF format, chain L [auth BBB] SDF format, chain M [auth BBB] SDF format, chain N [auth BBB] SDF format, chain Q [auth DDD] SDF format, chain R [auth DDD] SDF format, chain U [auth GGG] SDF format, chain V [auth GGG] MOL2 format, chain I [auth AAA] MOL2 format, chain J [auth AAA] MOL2 format, chain K [auth AAA] MOL2 format, chain L [auth BBB] MOL2 format, chain M [auth BBB] MOL2 format, chain N [auth BBB] MOL2 format, chain Q [auth DDD] MOL2 format, chain R [auth DDD] MOL2 format, chain U [auth GGG] MOL2 format, chain V [auth GGG]	I [auth AAA] J [auth AAA] K [auth AAA] L [auth BBB] M [auth BBB] I [auth AAA], J [auth AAA], K [auth AAA], L [auth BBB], M [auth BBB], N [auth BBB], Q [auth DDD], R [auth DDD], U [auth GGG], V [auth GGG]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain K [auth AAA] Focus chain L [auth BBB] Focus chain M [auth BBB] Focus chain N [auth BBB] Focus chain Q [auth DDD] Focus chain R [auth DDD] Focus chain U [auth GGG] Focus chain V [auth GGG] Interactions & Density Focus chain I [auth AAA] Focus chain J [auth AAA] Focus chain K [auth AAA] Focus chain L [auth BBB] Focus chain M [auth BBB] Focus chain N [auth BBB] Focus chain Q [auth DDD] Focus chain R [auth DDD] Focus chain U [auth GGG] Focus chain V [auth GGG]
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain F [auth AAA] SDF format, chain H [auth AAA] SDF format, chain P [auth DDD] SDF format, chain T [auth GGG] MOL2 format, chain F [auth AAA] MOL2 format, chain H [auth AAA] MOL2 format, chain P [auth DDD] MOL2 format, chain T [auth GGG]	F [auth AAA], H [auth AAA], P [auth DDD], T [auth GGG]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain F [auth AAA] Focus chain H [auth AAA] Focus chain P [auth DDD] Focus chain T [auth GGG] Interactions & Density Focus chain F [auth AAA] Focus chain H [auth AAA] Focus chain P [auth DDD] Focus chain T [auth GGG]