7AT6

Structure of thaumatin collected by femtosecond serial crystallography on a COC membrane

PDB DOI: https://doi.org/10.2210/pdb7AT6/pdb

Classification: PLANT PROTEIN
Organism(s): Thaumatococcus daniellii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-10-29 Released: 2021-11-24
Deposition Author(s): Martiel, I., Marsh, M., Vera, L., Huang, C.Y., Olieric, V., Leonarski, P., Nass, K., Padeste, C., Karpik, A., Wang, M., Pedrini, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.46 Å
R-Value Free: 0.177
R-Value Work: 0.159
R-Value Observed: 0.159

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Commissioning results from the SwissMX instrument for fixed target macromolecular crystallography at SwissFEL

Martiel, I., Pradervand, C., Panepucci, E., Zamofing, T., Nass, K., Marsh, M., Vera, L., Hunag, C.Y., Olieric, V., Buntschu, D., Kaelin, R., Leonarski, P., Ozerov, D., Padeste, C., Karpik, A., Thominet, V., Hora, J., Olieric, N., Weinert, T., Wranik, M., Brunle, S., Standfuss, J., Aurelius, O., John, J., Hogbom, M., Zhang, L., Einsle, O., Papp, G., Basu, S., Cipriani, F., Beaud, P., Mankowsky, R., Glettig, W., Mozzanica, A., Redford, S., Schmidt, B., Bunk, O., Abela, R., Wang, M., Lemke, H., Pedrini, B.

To be published.

Macromolecule Content

Total Structure Weight: 22.95 kDa
Atom Count: 1,823
Modelled Residue Count: 206
Deposited Residue Count: 207
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin I	A	207	Thaumatococcus daniellii	Mutation(s): 0
UniProt
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02883
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TLA Query on TLA Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	L(+)-TARTARIC ACID C₄ H₆ O₆ FEWJPZIEWOKRBE-JCYAYHJZSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]
PGR Query on PGR Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A]	D [auth A], E [auth A], F [auth A], G [auth A]	R-1,2-PROPANEDIOL C₃ H₈ O₂ DNIAPMSPPWPWGF-GSVOUGTGSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain L [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A]	H [auth A], I [auth A], J [auth A], K [auth A], L [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A]