6OMN

Glycosylated BMP2 homodimer

• PDB DOI: https://doi.org/10.2210/pdb6OMN/pdb

• Classification: CYTOKINE
• Organism(s): Homo sapiens
• Expression System: Cricetulus griseus
• Mutation(s): No 


• Deposited: 2019-04-19 Released: 2019-05-08 
• Deposition Author(s): Juo, Z.S., Seeherman, H.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.68 Å
• R-Value Free: 0.243 
• R-Value Work: 0.175 
• R-Value Observed: 0.179 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 52.44 kDa 
• Atom Count: 3,595 
• Modelled Residue Count: 421 
• Deposited Residue Count: 432 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bone morphogenetic protein 2	A [auth E], B [auth F], C [auth G], D [auth H]	108	Homo sapiens	Mutation(s): 0  Gene Names: BMP2, BMP2A
UniProt & NIH Common Fund Data Resources
Find proteins for P12643 (Homo sapiens) Explore P12643  Go to UniProtKB:  P12643
PHAROS:  P12643 GTEx:  ENSG00000125845

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E [auth A], F [auth B], G [auth C], H [auth D]	5		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42227JK GlyCosmos:  G42227JK GlyGen:  G42227JK

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.68 Å
• R-Value Free: 0.243 
• R-Value Work: 0.175 
• R-Value Observed: 0.179 
• Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.743	α = 90
b = 62.743	β = 90
c = 126.35	γ = 120

Software Package:

Software Name	Purpose
BUSTER	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-05-08 
Deposition Author(s): Juo, Z.S., Seeherman, H.

Revision History  

• Version 1.0: 2019-05-08
  Type: Initial release
  
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary