6ZZ6

Cryo-EM structure of S.cerevisiae cohesin-Scc2-DNA complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Transport of DNA within cohesin involves clamping on top of engaged heads by Scc2 and entrapment within the ring by Scc3.

Collier, J.E.Lee, B.G.Roig, M.B.Yatskevich, S.Petela, N.J.Metson, J.Voulgaris, M.Gonzalez Llamazares, A.Lowe, J.Nasmyth, K.A.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.59560
  • Primary Citation of Related Structures:  
    6ZZ6

  • PubMed Abstract: 

    In addition to extruding DNA loops, cohesin entraps within its SMC-kleisin ring (S-K) individual DNAs during G1 and sister DNAs during S-phase. All three activities require related hook-shaped proteins called Scc2 and Scc3. Using thiol-specific crosslinking we provide rigorous proof of entrapment activity in vitro. Scc2 alone promotes entrapment of DNAs in the E-S and E-K compartments, between ATP-bound engaged heads and the SMC hinge and associated kleisin, respectively. This does not require ATP hydrolysis nor is it accompanied by entrapment within S-K rings, which is a slower process requiring Scc3. Cryo-EM reveals that DNAs transported into E-S/E-K compartments are 'clamped' in a sub-compartment created by Scc2's association with engaged heads whose coiled coils are folded around their elbow. We suggest that clamping may be a recurrent feature of cohesin complexes active in loop extrusion and that this conformation precedes the S-K entrapment required for sister chromatid cohesion.


  • Organizational Affiliation

    Department of Biochemistry, University of Oxford, Oxford, United Kingdom.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 1,Structural maintenance of chromosomes protein 1,Structural maintenance of chromosomes protein 1360Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SMC1CHL10YFL008W
UniProt
Find proteins for P32908 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P32908
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UniProt GroupP32908
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Structural maintenance of chromosomes protein 3,Structural maintenance of chromosomes protein 3,Structural maintenance of chromosomes protein 3423Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SMC3YJL074CJ1049
UniProt
Find proteins for P47037 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP47037
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 1,Sister chromatid cohesion protein 1,Sister chromatid cohesion protein 183Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MCD1PDS3RHC21SCC1YDL003WYD8119.04
UniProt
Find proteins for Q12158 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ12158
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 21,493Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SCC2YDR180WYD9395.14
UniProt
Find proteins for Q04002 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (34-MER)E [auth F]34synthetic construct
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (34-MER)F [auth G]34synthetic construct
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom202754/Z/16/Z
Medical Research Council (MRC, United Kingdom)United KingdomU105184326

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-30
    Type: Initial release