6Y37

CCAAT-binding complex from Aspergillus nidulans with cccA DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of HapE P88L -linked antifungal triazole resistance in Aspergillus fumigatus .

Hortschansky, P.Misslinger, M.Morl, J.Gsaller, F.Bromley, M.J.Brakhage, A.A.Groll, M.Haas, H.Huber, E.M.

(2020) Life Sci Alliance 3

  • DOI: https://doi.org/10.26508/lsa.202000729
  • Primary Citation of Related Structures:  
    6Y35, 6Y36, 6Y37, 6Y39

  • PubMed Abstract: 

    Azoles are first-line therapeutics for human and plant fungal infections, but their broad use has promoted the development of resistances. Recently, a pan-azole-resistant clinical Aspergillus fumigatus isolate was identified to carry the mutation P88L in subunit HapE of the CCAAT-binding complex (CBC), a conserved eukaryotic transcription factor. Here, we define the mechanistic basis for resistance in this isolate by showing that the HapE P88L mutation interferes with the CBC's ability to bend and sense CCAAT motifs. This failure leads to transcriptional derepression of the cyp51A gene, which encodes the target of azoles, the 14-α sterol demethylase Cyp51A, and ultimately causes drug resistance. In addition, we demonstrate that the CBC-associated transcriptional regulator HapX assists cyp51A repression in low-iron environments and that this iron-dependent effect is lost in the HapE P88L mutant. Altogether, these results indicate that the mutation HapE P88L confers increased resistance to azoles compared with wt A. fumigatus , particularly in low-iron clinical niches such as the lung.


  • Organizational Affiliation

    Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (HKI), and Friedrich Schiller University Jena, Jena, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HapB64Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: ANIA_07545
UniProt
Find proteins for G5EAZ0 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore G5EAZ0 
Go to UniProtKB:  G5EAZ0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5EAZ0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor HapC (Eurofung)92Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: ANIA_04034
UniProt
Find proteins for Q5B5Z6 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore Q5B5Z6 
Go to UniProtKB:  Q5B5Z6
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UniProt GroupQ5B5Z6
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
CBFD_NFYB_HMF domain-containing protein119Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: AN6492.2
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  • Reference Sequence

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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (25-MER)25Aspergillus nidulans FGSC A4
Sequence Annotations
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  • Reference Sequence

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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (25-MER)25Aspergillus nidulans FGSC A4
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
F [auth B]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.68α = 90
b = 72.01β = 90
c = 148.45γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyGR 1861/8-1
German Research Foundation (DFG)GermanySFB1309-325871075

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-27
    Type: Initial release
  • Version 1.1: 2020-06-10
    Changes: Database references
  • Version 1.2: 2020-09-30
    Changes: Database references
  • Version 1.3: 2024-01-24
    Changes: Data collection, Database references, Refinement description