6T33

The unusual structure of Ruminococcin C1 antimicrobial peptide confers activity against clinical pathogens


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties.

Roblin, C.Chiumento, S.Bornet, O.Nouailler, M.Muller, C.S.Jeannot, K.Basset, C.Kieffer-Jaquinod, S.Coute, Y.Torelli, S.Le Pape, L.Schunemann, V.Olleik, H.De La Villeon, B.Sockeel, P.Di Pasquale, E.Nicoletti, C.Vidal, N.Poljak, L.Iranzo, O.Giardina, T.Fons, M.Devillard, E.Polard, P.Maresca, M.Perrier, J.Atta, M.Guerlesquin, F.Lafond, M.Duarte, V.

(2020) Proc Natl Acad Sci U S A 117: 19168-19177

  • DOI: https://doi.org/10.1073/pnas.2004045117
  • Primary Citation of Related Structures:  
    6T33

  • PubMed Abstract: 

    The emergence of superbugs developing resistance to antibiotics and the resurgence of microbial infections have led scientists to start an antimicrobial arms race. In this context, we have previously identified an active RiPP, the Ruminococcin C1, naturally produced by Ruminococcus gnavus E1, a symbiont of the healthy human intestinal microbiota. This RiPP, subclassified as a sactipeptide, requires the host digestive system to become active against pathogenic Clostridia and multidrug-resistant strains. Here we report its unique compact structure on the basis of four intramolecular thioether bridges with reversed stereochemistry introduced posttranslationally by a specific radical-SAM sactisynthase. This structure confers to the Ruminococcin C1 important clinical properties including stability to digestive conditions and physicochemical treatments, a higher affinity for bacteria than simulated intestinal epithelium, a valuable activity at therapeutic doses on a range of clinical pathogens, mediated by energy resources disruption, and finally safety for human gut tissues.


  • Organizational Affiliation

    Aix-Marseille Université, CNRS, Centrale Marseille, Institut des Sciences Moléculaires de Marseille (iSm2), 13013 Marseille, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ruminococcin C44Mediterraneibacter gnavus E1Mutation(s): 0 
Gene Names: rumC1
UniProt
Find proteins for F8QV07 (Mediterraneibacter gnavus E1)
Explore F8QV07 
Go to UniProtKB:  F8QV07
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF8QV07
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-15-CE21-0020

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-12
    Type: Initial release
  • Version 1.1: 2020-08-26
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other