Download MendeleyTrypanosoma cruzi farnesyl diphosphate synthase in complex with 3np
Magari, F., Heine, A., Klebe, G.To be published.
6SDO
Trypanosoma cruzi farnesyl diphosphate synthase in complex with 3np
- PDB DOI: https://doi.org/10.2210/pdb6SDO/pdb
- Classification: TRANSFERASE
- Organism(s): Trypanosoma cruzi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-07-29 Released: 2020-08-26
- Funding Organization(s): European Union
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.190
- R-Value Work: 0.170
- R-Value Observed: 0.171
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Farnesyl diphosphate synthase | 362 | Trypanosoma cruzi | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8WS26 (Trypanosoma cruzi) Explore Q8WS26 Go to UniProtKB: Q8WS26 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8WS26 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZCQ (Subject of Investigation/LOI) Query on ZCQ | E [auth A] | 3-nitrophenol C6 H5 N O3 RTZZCYNQPHTPPL-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.190
- R-Value Work: 0.170
- R-Value Observed: 0.171
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.824 | α = 90 |
| b = 57.824 | β = 90 |
| c = 398.248 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-08-26 Deposition Author(s): Magari, F., Heine, A., Klebe, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Union | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-08-26
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
