6QB8

Human CCT:mLST8 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and functional analysis of the role of the chaperonin CCT in mTOR complex assembly.

Cuellar, J.Ludlam, W.G.Tensmeyer, N.C.Aoba, T.Dhavale, M.Santiago, C.Bueno-Carrasco, M.T.Mann, M.J.Plimpton, R.L.Makaju, A.Franklin, S.Willardson, B.M.Valpuesta, J.M.

(2019) Nat Commun 10: 2865-2865

  • DOI: https://doi.org/10.1038/s41467-019-10781-1
  • Primary Citation of Related Structures:  
    6QB8

  • PubMed Abstract: 

    The mechanistic target of rapamycin (mTOR) kinase forms two multi-protein signaling complexes, mTORC1 and mTORC2, which are master regulators of cell growth, metabolism, survival and autophagy. Two of the subunits of these complexes are mLST8 and Raptor, β-propeller proteins that stabilize the mTOR kinase and recruit substrates, respectively. Here we report that the eukaryotic chaperonin CCT plays a key role in mTORC assembly and signaling by folding both mLST8 and Raptor. A high resolution (4.0 Å) cryo-EM structure of the human mLST8-CCT intermediate isolated directly from cells shows mLST8 in a near-native state bound to CCT deep within the folding chamber between the two CCT rings, and interacting mainly with the disordered N- and C-termini of specific CCT subunits of both rings. These findings describe a unique function of CCT in mTORC assembly and a distinct binding site in CCT for mLST8, far from those found for similar β-propeller proteins.


  • Organizational Affiliation

    Centro Nacional de Biotecnología, Campus de la Universidad Autónoma de Madrid, 28049, Madrid, Spain.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alphaA [auth a],
I [auth A]
556Homo sapiensMutation(s): 0 
Gene Names: TCP1CCT1CCTA
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Find proteins for P17987 (Homo sapiens)
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PHAROS:  P17987
GTEx:  ENSG00000120438 
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UniProt GroupP17987
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit betaB [auth b],
J [auth B]
535Homo sapiensMutation(s): 0 
Gene Names: CCT299D8.1CCTB
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Find proteins for P78371 (Homo sapiens)
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PHAROS:  P78371
GTEx:  ENSG00000166226 
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UniProt GroupP78371
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit deltaC [auth d],
K [auth D]
539Homo sapiensMutation(s): 0 
Gene Names: CCT4CCTDSRB
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Find proteins for P50991 (Homo sapiens)
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PHAROS:  P50991
GTEx:  ENSG00000115484 
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UniProt GroupP50991
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilonD [auth e],
L [auth E]
541Homo sapiensMutation(s): 0 
Gene Names: CCT5CCTEKIAA0098
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Find proteins for P48643 (Homo sapiens)
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GTEx:  ENSG00000150753 
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UniProt GroupP48643
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gammaE [auth g],
M [auth G]
544Homo sapiensMutation(s): 0 
Gene Names: CCT3CCTGTRIC5
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GTEx:  ENSG00000163468 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit etaF [auth h],
N [auth H]
543Homo sapiensMutation(s): 0 
Gene Names: CCT7CCTHNIP7-1
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Find proteins for Q99832 (Homo sapiens)
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PHAROS:  Q99832
GTEx:  ENSG00000135624 
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UniProt GroupQ99832
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit thetaG [auth q],
O [auth Q]
548Homo sapiensMutation(s): 0 
Gene Names: CCT8C21orf112CCTQKIAA0002
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Find proteins for P50990 (Homo sapiens)
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GTEx:  ENSG00000156261 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zetaH [auth z],
P [auth Z]
531Homo sapiensMutation(s): 0 
Gene Names: CCT6ACCT6CCTZ
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Find proteins for P40227 (Homo sapiens)
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GTEx:  ENSG00000146731 
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UniProt GroupP40227
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2
MODEL REFINEMENTPHENIX1.14

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesEY012287
Spanish Ministry of Science, Innovation, and UniversitiesSpainBFU2016-75984
SpainS2013/MIT2807

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-03
    Type: Initial release
  • Version 1.1: 2019-07-10
    Changes: Data collection, Database references
  • Version 1.2: 2022-03-30
    Changes: Author supporting evidence, Database references