6Q1F

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Atomic structure of the human herpesvirus 6B capsid and capsid-associated tegument complexes.

Zhang, Y.Liu, W.Li, Z.Kumar, V.Alvarez-Cabrera, A.L.Leibovitch, E.C.Cui, Y.Mei, Y.Bi, G.Q.Jacobson, S.Zhou, Z.H.

(2019) Nat Commun 10: 5346-5346

  • DOI: https://doi.org/10.1038/s41467-019-13064-x
  • Primary Citation of Related Structures:  
    6Q1F

  • PubMed Abstract: 

    Human herpesvirus 6B (HHV-6B) belongs to the β-herpesvirus subfamily of the Herpesviridae. To understand capsid assembly and capsid-tegument interactions, here we report atomic structures of HHV-6B capsid and capsid-associated tegument complex (CATC) obtained by cryoEM and sub-particle reconstruction. Compared to other β-herpesviruses, HHV-6B exhibits high similarity in capsid structure but organizational differences in its CATC (pU11 tetramer). 180 "VΛ"-shaped CATCs are observed in HHV-6B, distinguishing from the 255 "Λ"-shaped dimeric CATCs observed in murine cytomegalovirus and the 310 "Δ"-shaped CATCs in human cytomegalovirus. This trend in CATC quantity correlates with the increasing genomes sizes of these β-herpesviruses. Incompatible distances revealed by the atomic structures rationalize the lack of CATC's binding to triplexes Ta, Tc, and Tf in HHV-6B. Our results offer insights into HHV-6B capsid assembly and the roles of its tegument proteins, including not only the β-herpesvirus-specific pU11 and pU14, but also those conserved across all subfamilies of Herpesviridae.


  • Organizational Affiliation

    Center for Integrative Imaging, Hefei National Laboratory for Physical Sciences at the Microscale, and School of Life Sciences, University of Science and Technology of China (USTC), Hefei, Anhui, 230026, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein1,345Human herpesvirus 6 strain Z29Mutation(s): 0 
UniProt
Find proteins for Q9QJ26 (Human herpesvirus 6B (strain Z29))
Explore Q9QJ26 
Go to UniProtKB:  Q9QJ26
Entity Groups  
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UniProt GroupQ9QJ26
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Large structural phosphoprotein858Human herpesvirus 6 strain Z29Mutation(s): 0 
UniProt
Find proteins for Q69535 (Human herpesvirus 6B (strain Z29))
Explore Q69535 
Go to UniProtKB:  Q69535
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UniProt GroupQ69535
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Small capsomere-interacting protein89Human herpesvirus 6 strain Z29Mutation(s): 0 
UniProt
Find proteins for Q9WT32 (Human herpesvirus 6B (strain Z29))
Explore Q9WT32 
Go to UniProtKB:  Q9WT32
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UniProt GroupQ9WT32
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Triplex capsid protein 1SA [auth 5],
TA [auth S],
UA [auth T],
VA [auth U],
WA [auth V]
299Human herpesvirus 6 strain Z29Mutation(s): 0 
UniProt
Find proteins for Q9WT35 (Human herpesvirus 6B (strain Z29))
Explore Q9WT35 
Go to UniProtKB:  Q9WT35
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UniProt GroupQ9WT35
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Triplex capsid protein 2296Human herpesvirus 6 strain Z29Mutation(s): 0 
UniProt
Find proteins for Q9QJ27 (Human herpesvirus 6B (strain Z29))
Explore Q9QJ27 
Go to UniProtKB:  Q9QJ27
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UniProt GroupQ9QJ27
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Dental and Craniofacial Research (NIH/NIDCR)United StatesDE028583, DE025567
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI094386
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1S10RR23057, 1S10OD018111, and 1U24GM116792
National Science Foundation (NSF, United States)United StatesDBI-1338135 and DMR-1548924

Revision History  (Full details and data files)

  • Version 1.0: 2019-12-11
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Data collection, Database references, Derived calculations