6OZV

The structure of condensation and adenylation domains of teixobactin-producing nonribosomal peptide synthetase Txo1 serine module in complex with AMP

• PDB DOI: https://doi.org/10.2210/pdb6OZV/pdb

• Classification: BIOSYNTHETIC PROTEIN
• Organism(s): Eleftheria terrae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-05-16 Released: 2019-05-29 
• Deposition Author(s): Tan, K., Zhou, M., Jedrzejczak, R., Babnigg, G., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.18 Å
• R-Value Free: 0.217 
• R-Value Work: 0.190 
• R-Value Observed: 0.191 

Literature

Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains.

Tan, K., Zhou, M., Jedrzejczak, R.P., Wu, R., Higuera, R.A., Borek, D., Babnigg, G., Joachimiak, A.

(2020) Curr Res Struct Biol 2: 14-24

• DOI: https://doi.org/10.1016/j.crstbi.2020.01.002

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 97.39 kDa 
• Atom Count: 6,706 
• Modelled Residue Count: 838 
• Deposited Residue Count: 873 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Txo1	A	873	Eleftheria terrae	Mutation(s): 0
UniProt
Find proteins for A0A0B5GUD2 (Eleftheria terrae) Explore A0A0B5GUD2  Go to UniProtKB:  A0A0B5GUD2

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AMP	B [auth A]	ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N
SO4	C [auth A], D [auth A], E [auth A], F [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	G [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.18 Å
• R-Value Free: 0.217 
• R-Value Work: 0.190 
• R-Value Observed: 0.191 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 154.67	α = 90
b = 90.859	β = 106.72
c = 98.184	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-05-29 
Deposition Author(s): Tan, K., Zhou, M., Jedrzejczak, R., Babnigg, G., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700060C

Revision History  

• Version 1.0: 2019-05-29
  Type: Initial release
  
• Version 1.1: 2019-12-18
  Changes: Author supporting evidence
• Version 1.2: 2020-03-25
  Changes: Database references
• Version 1.3: 2023-10-11
  Changes: Data collection, Database references, Refinement description