6INX

Structural insights into a novel glycoside hydrolase family 18 N-acetylglucosaminidase from Paenibacillus barengoltzii

PDB DOI: https://doi.org/10.2210/pdb6INX/pdb

Classification: HYDROLASE
Organism(s): Paenibacillus barengoltzii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-10-28 Released: 2019-10-30
Deposition Author(s): Jiang, Z., Ma, J., Huang, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.43 Å
R-Value Free: 0.203
R-Value Work: 0.181
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into a novel glycoside hydrolase family 18 N-acetylglucosaminidase from Paenibacillus barengoltzii

Jiang, Z.Q., Ma, J.W., Huang, P.

To be published.

Macromolecule Content

Total Structure Weight: 39.03 kDa
Atom Count: 3,068
Modelled Residue Count: 339
Deposited Residue Count: 345
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N-acetylglucosaminidase	A	345	Paenibacillus barengoltzii	Mutation(s): 0 EC: 3.2.1.96
UniProt
Find proteins for A0A482G4C5 (Paenibacillus barengoltzii) Explore A0A482G4C5 Go to UniProtKB: A0A482G4C5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A482G4C5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.43 Å
R-Value Free: 0.203
R-Value Work: 0.181
R-Value Observed: 0.182
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.89	α = 90
b = 76.3	β = 126.79
c = 61.44	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	model building
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-10-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-10-30
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.