Download MendeleyBlood group synthase AAGlyB in its apo form cryoprotected with PEG 3350
Rocha, J., Batot, G.O., Palcic, M.M., Breton, C., Royant, A.To be published.
6GWZ
Blood group synthase AAGlyB in its apo form cryoprotected with PEG 3350
- PDB DOI: https://doi.org/10.2210/pdb6GWZ/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2018-06-26 Released: 2019-07-10
- Funding Organization(s): French National Research Agency
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.208
- R-Value Work: 0.168
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase) | 298 | Homo sapiens | Mutation(s): 1 Gene Names: ABO |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P16442 (Homo sapiens) Explore P16442 Go to UniProtKB: P16442 | |||||
PHAROS: P16442 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P16442 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.208
- R-Value Work: 0.168
- R-Value Observed: 0.170
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.879 | α = 90 |
| b = 149.625 | β = 90 |
| c = 79.644 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-07-10 Deposition Author(s): Rocha, J., Royant, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| French National Research Agency | France | ANR-13-BSV8-0011-02 |
Revision History (Full details and data files)
- Version 1.0: 2019-07-10
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
