6F59

Crystal structure of human Brachyury (T) G177D variant in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 6F59

Classification: TRANSCRIPTION

Total Structure Weight: 60274.31


Macromolecule Entities
Molecule Chains Length Organism Details
Brachyury protein A, B 192 Homo sapiens Mutation: G177D
Gene Name(s): T Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) C, D 26 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.221
  • Space Group: P 43 2 2

Unit Cell:

Length (Å) Angle (°)
a = 75.27 α = 90.00
b = 75.27 β = 90.00
c = 288.47 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-12-01
  • Released Date: 2017-12-13
  • Deposition author(s): Newman, J.A., Gavard, A.E., Krojer, T., Shrestha, L., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Revision History

  • Version 1_0: 2017-12-13

    Type: Initial release