6B14

Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 6B14

Classification: immune system / rna

Total Structure Weight: 74239.93


Macromolecule Entities
Molecule Chains Length Organism Details
Heavy chain of Fab BL3-6S97N H 225 Mus musculus
Light chain of Fab BL3-6S97N L 215 Mus musculus
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (86-MER) R 83 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

R MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.212
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 146.77 α = 90.00
b = 79.99 β = 111.76
c = 92.89 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-16
  • Released Date: 2017-12-27
  • Deposition author(s): DasGupta, S., Shelke, S.A., Piccirilli, J.A.

Revision History

  • Version 1_0: 2017-12-27

    Type: Initial release

  • Version 1_1: 2018-01-10

    Type: Source and taxonomy

  • Version 1_2: 2018-01-17

    Type: Author supporting evidence, Database references, Structure summary