5WKP

Crystal Structure of the Human mitochondrial Cysteine Desulfurase in complex with ISD11 and Iron-Sulfur Cluster Scaffold Protein ISCU1, and E. coli ACP1 protein at 3.15A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 5WKP

Classification: TRANSFERASE

Total Structure Weight: 162969.88

Macromolecule Entities
Molecule Chains Length Organism Details
Cysteine desulfurase, mitochondrial A, E 406 Homo sapiens EC#: 2.8.1.7 IUBMB
Fragment: UNP residues 56-457
Gene Name(s): NFS1 Gene View NIFS HUSSY-08
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LYR motif-containing protein 4 B, F 91 Homo sapiens Mutation: S11A
Gene Name(s): LYRM4 Gene View C6orf149 ISD11 CGI-203
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Acyl carrier protein C, G 77 Escherichia coli Gene Name(s): acpP ECS88_1108
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial D, H 150 Homo sapiens Mutation: M115I
Gene Name(s): ISCU Gene View NIFUN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8Q1
Query on 8Q1

C, G S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]- beta-alanyl}amino)ethyl] dodecanethioate
S-dodecanoyl-4'-phosphopantetheine (Synonym)
C23 H45 N2 O8 P S
MVHUOSAYFQKAMT-NRFANRHFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

A, E PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 98.36 α = 90.00
b = 123.29 β = 90.00
c = 151.72 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-25
  • Released Date: 2017-11-15
  • Deposition author(s): Boniecki, M.T., Cygler, M.

Revision History

  • Version 1_0: 2017-11-15

    Type: Initial release