5LJX

Structure of hantavirus envelope glycoprotein Gc in postfusion conformation in presence of 600 mM KCL

• PDB DOI: https://doi.org/10.2210/pdb5LJX/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Orthohantavirus hantanense
• Expression System: Drosophila melanogaster
• Mutation(s): No 


• Deposited: 2016-07-20 Released: 2016-09-14 
• Deposition Author(s): Guardado-Calvo, P., Rey, F.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 0.208 
• R-Value Work: 0.185 
• R-Value Observed: 0.186 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 54.92 kDa 
• Atom Count: 3,435 
• Modelled Residue Count: 382 
• Deposited Residue Count: 495 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelopment polyprotein	A	495	Orthohantavirus hantanense	Mutation(s): 0  Gene Names: GP
UniProt
Find proteins for P08668 (Hantaan virus (strain 76-118)) Explore P08668  Go to UniProtKB:  P08668

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	B	3		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G28454KX GlyCosmos:  G28454KX GlyGen:  G28454KX

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
K	C [auth A]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
NA	D [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 0.208 
• R-Value Work: 0.185 
• R-Value Observed: 0.186 
• Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.048	α = 90
b = 107.048	β = 90
c = 127.512	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-09-14 
Deposition Author(s): Guardado-Calvo, P., Rey, F.A.

Revision History  

• Version 1.0: 2016-09-14
  Type: Initial release
  
• Version 1.1: 2016-11-09
  Changes: Database references
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary
• Version 2.1: 2024-01-10
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary