5JLC

Structure of CYP51 from the pathogen Candida glabrata


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 5JLC

Classification: OXIDOREDUCTASE / OXIDOREDUCATSE INHIBITOR

Total Structure Weight: 61109.33

Macromolecule Entities
Molecule Chains Length Organism Details
Lanosterol 14-alpha demethylase A 515 [candida] glabrata EC#: 1.14.13.70 IUBMB
Gene Name(s): ERG11 CYP51 CAGL0E04334g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1YN
Query on 1YN

A 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)- 2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol- 1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin- 1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol- 3-one
Itraconazole (Synonym)
C35 H38 Cl2 N8 O4
VHVPQPYKVGDNFY-DFMJLFEVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.200
  • Space Group: I 4 3 2

Unit Cell:

Length (Å) Angle (°)
a = 237.94 α = 90.00
b = 237.94 β = 90.00
c = 237.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-26
  • Released Date: 2016-05-25
  • Deposition author(s): Keniya, M.V., Sabherwal, M., Wilson, R.K., Sagatova, A.A., Tyndall, J.D.A., Monk, B.C.

Revision History

  • Version 1_0: 2016-05-25

    Type: Initial release

  • Version 1_1: 2017-09-20

    Type: Data collection, Derived calculations