5HAX

Crystal structure of Chaetomium thermophilum Nup170 NTD-Nup53 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5HAX

Classification: TRANSPORT PROTEIN

Total Structure Weight: 86395.05

Macromolecule Entities
Molecule Chains Length Organism Details
Nucleoporin NUP170 A 742 Chaetomium thermophilum Mutation: ΔP293, ΔG294, ΔW295, ΔS296, ΔA297, ΔV298, ΔV299, ΔP300, ΔS301, ΔL302, ΔA303, ΔG304, ΔL305
Gene Name(s): NUP170 CTHT_0036270
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleoporin NUP53 B 33 Chaetomium thermophilum Gene Name(s): NUP53 CTHT_0012410
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 69.23 α = 90.00
b = 106.16 β = 90.00
c = 120.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-31
  • Released Date: 2016-04-20
  • Deposition author(s): Lin, D.H., Mobbs, G., Hoelz, A.

Revision History

  • Version 1_0: 2016-04-20

    Type: Initial release

  • Version 1_1: 2016-04-27

    Type: Database references

  • Version 1_2: 2016-05-04

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence, Derived calculations

  • Version 1_4: 2017-09-27

    Type: Author supporting evidence