Download MendeleyStructure of RRM3 Domain of Mip6 at 1.25 A Resolution
Mohamad, N., Bravo, J.To be published.
5D78
Structure of RRM3 Domain of Mip6 at 1.25 A Resolution
- PDB DOI: https://doi.org/10.2210/pdb5D78/pdb
- Classification: RNA BINDING PROTEIN
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-08-13 Released: 2016-08-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.177
- R-Value Work: 0.137
- R-Value Observed: 0.139
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA-binding protein MIP6 | 81 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: MIP6, YHR015W |  | |
UniProt | |||||
Find proteins for P38760 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38760 Go to UniProtKB: P38760 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P38760 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| BME Query on BME | B [auth A], C [auth A] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| OCY Query on OCY | A | L-PEPTIDE LINKING | C5 H11 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.177
- R-Value Work: 0.137
- R-Value Observed: 0.139
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 25.842 | α = 90 |
| b = 47.023 | β = 109.79 |
| c = 30.563 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-08-17 Deposition Author(s): Mohamad, N., Bravo, J.
Revision History (Full details and data files)
- Version 1.0: 2016-08-17
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
