5CF2

Crystal Structure of the I80Y/L114V/I116V mutant of LEH

• PDB DOI: https://doi.org/10.2210/pdb5CF2/pdb

• Classification: HYDROLASE
• Organism(s): Rhodococcus erythropolis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-07-08 Released: 2016-07-13 
• Deposition Author(s): Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.241 
• R-Value Work: 0.186 
• R-Value Observed: 0.189 

Literature

Crystal Structure of the I80Y/L114V/I116V mutant of LEH

Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 69.54 kDa 
• Atom Count: 4,570 
• Modelled Residue Count: 584 
• Deposited Residue Count: 620 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Limonene-1,2-epoxide hydrolase	A, B, C, D	155	Rhodococcus erythropolis	Mutation(s): 3  Gene Names: limA EC: 3.3.2.8
UniProt
Find proteins for Q9ZAG3 (Rhodococcus erythropolis) Explore Q9ZAG3  Go to UniProtKB:  Q9ZAG3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.241 
• R-Value Work: 0.186 
• R-Value Observed: 0.189 
• Space Group: P 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.651	α = 90
b = 103.651	β = 90
c = 73.263	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-07-13 
Deposition Author(s): Wu, L., Sun, Z.T., Reetz, M.T., Zhou, J.H.

Revision History  

• Version 1.0: 2016-07-13
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description