5C81

ZHD-Intermediate complex after ZHD crystal soaking in ZEN for 12min

  • Classification: HYDROLASE
  • Organism(s): Clonostachys rosea
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2015-06-25 Released: 2016-06-29 
  • Deposition Author(s): Hu, X.-J., Qi, Q., Yang, W.-J.
  • Funding Organization(s): Chinese High-tech Research and Development program, 973 Program of the Ministry of Science and Technology of China

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.149 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history. 


Literature

A Case Study of Lactonase ZHD

Ming, D.-M., Qi, Q., Yang, W.-J., Sun, K.-L., Xu, T.-Y., Huang, Q., Hu, X.-J., Lv, H.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Zearalenone hydrolase
A, B
284Clonostachys roseaMutation(s): 0 
Gene Names: zhd101
UniProt
Find proteins for Q8NKB0 (Bionectria ochroleuca)
Explore Q8NKB0 
Go to UniProtKB:  Q8NKB0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NKB0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.149 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.53α = 90
b = 90.08β = 90
c = 112.92γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Chinese High-tech Research and Development programChina2013AA102803B
Chinese High-tech Research and Development programChina2014AA021301
973 Program of the Ministry of Science and Technology of ChinaChina2009CB918602

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Derived calculations, Refinement description