5YEL

Crystal structure of CTCF ZFs6-11-gb7CSE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.268

Literature

Macromolecules
Sequence Display for 5YEL

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 74576.05


Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional repressor CTCF A, B 176 Homo sapiens Fragment: UNP residues 405-580
Mutation: C504S
Gene Name(s): CTCF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) D, F 26 Synthetic construct
DNA (26-MER) C, E 26 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.268
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 190.99 α = 90.00
b = 69.63 β = 116.25
c = 84.44 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-18
  • Released Date: 2017-11-29
  • Deposition author(s): Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.

Revision History

  • Version 1_0: 2017-11-29

    Type: Initial release