5YEF

Crystal structure of CTCF ZFs2-8-Hs5-1aE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 5YEF

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 163426.94


Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional repressor CTCF A, B, G, J 199 Homo sapiens Fragment: UNP residues 292-490
Gene Name(s): CTCF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (27-MER) C, E, H, K 27 Synthetic construct
DNA (27-MER) D, F, I, L 28 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, G, J ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.224
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 90.11 α = 90.00
b = 143.06 β = 119.69
c = 90.23 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-17
  • Released Date: 2017-11-29
  • Deposition author(s): Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.

Revision History

  • Version 1_0: 2017-11-29

    Type: Initial release