5Y6Z

Crystal structure of the coxsackievirus A16 polymerase elongation complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 5Y6Z

Classification: TRANSFERASE / RNA

Total Structure Weight: 138442.66


Macromolecule Entities
Molecule Chains Length Organism Details
Genome polyprotein A, E 468 Enterovirus a Fragment: UNP residues 1732-2193
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
Template RNA (33-MER) B, F 33 Synthetic construct
Product RNA (14-MER) C, G 14 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B, C, G PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

E MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.218
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 93.72 α = 90.00
b = 93.72 β = 90.00
c = 167.51 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-15
  • Released Date: 2017-12-27
  • Deposition author(s): Bi, P., Shu, B., Gong, P.

Revision History

  • Version 1_0: 2017-12-27

    Type: Initial release

  • Version 1_1: 2018-01-17

    Type: Database references