5XQ2

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 5A6 on the guide strand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 5XQ2

Classification: DNA BINDING PROTEIN

Total Structure Weight: 180527.80


Macromolecule Entities
Molecule Chains Length Organism Details
TtAgo (D546N) A, B 685 Thermus thermophilus Mutation: D546N
Gene Name(s): TT_P0026
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*GP*AP*AP*GP*AP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') E, X 22 Thermus thermophilus
DNA (5'-D(*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') F, Y 19 Thermus thermophilus
DNA (5'-D(*AP*GP*T)-3') C, D 3 Thermus thermophilus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

E, X MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.252
  • Space Group: P 21 3

Unit Cell:

Length (Å) Angle (°)
a = 201.84 α = 90.00
b = 201.84 β = 90.00
c = 201.84 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-10-04
  • Deposition author(s): Sheng, G., Gogakos, T., Wang, J., Zhao, H., Serganov, A., Juranek, S., Tuschl, T., Patel, D., Wang, Y.

Revision History

  • Version 1_0: 2017-10-04

    Type: Initial release