5XOW

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 6'A7' on the target strand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 5XOW

Classification: DNA BINDING PROTEIN

Total Structure Weight: 89612.11


Macromolecule Entities
Molecule Chains Length Organism Details
TtAgo (D546N) A 685 Thermus thermophilus Mutation: D546N
Gene Name(s): TT_P0026
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*(TD)P*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') C 21 Thermus thermophilus
RNA (5'-R(P*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*AP*CP*CP*UP*CP*G)-3') G 20 Thermus thermophilus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.214
  • Space Group: P 41 3 2

Unit Cell:

Length (Å) Angle (°)
a = 200.82 α = 90.00
b = 200.82 β = 90.00
c = 200.82 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-31
  • Released Date: 2017-10-04
  • Deposition author(s): Sheng, G., Wang, J., Zhao, H., Wang, Y.

Revision History

  • Version 1_0: 2017-10-04

    Type: Initial release

  • Version 1_1: 2017-10-11

    Type: Structure summary