5XJZ

Structure of DNA1-Ag complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.131
  • R-Value Work: 0.124

Literature

Macromolecules
Sequence Display for 5XJZ

Classification: DNA

Total Structure Weight: 5351.13

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*C)-3') A, B 8 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

B SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AG
Query on AG

A SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Free: 0.131
  • R-Value Work: 0.124
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 40.24 α = 90.00
b = 42.55 β = 90.00
c = 25.30 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-04
  • Released Date: 2017-12-06
  • Deposition author(s): Liu, H.H., Gan, J.H.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release