5XFP

Binary complex of PHF1 and a double stranded DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 5XFP

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 122069.73


Macromolecule Entities
Molecule Chains Length Organism Details
PHD finger protein 1 A, B, E 336 Homo sapiens Fragment: UNP residues 25-360
Gene Name(s): PHF1 Gene View PCL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3') C, D 13 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A, B 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.209
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 109.60 α = 90.00
b = 110.29 β = 90.00
c = 118.85 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-11
  • Released Date: 2017-09-13
  • Deposition author(s): Wang, Z., Li, H.

Revision History

No revisions since initial release