5X6E

Crystal structure of PrfA-DNA binary complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.249

Literature

Macromolecules
Sequence Display for 5X6E

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 219296.91


Macromolecule Entities
Molecule Chains Length Organism Details
Listeriolysin positive regulatory factor A A, B, E..., F, M, NA, B, E, F, M, N 237 Listeria monocytogenes Gene Name(s): prfA lmo0200
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (29-MER) C, G, O 29 Listeria monocytogenes
DNA (28-MER) D, H, P 29 Listeria monocytogenes

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSH
Query on GSH

A, B, E, F, M, N GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.249
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.02 α = 90.00
b = 96.59 β = 90.00
c = 370.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-02-21
  • Released Date: 2017-04-12
  • Deposition author(s): Wang, Y., Feng, H., Zhu, Y.L., Gao, P.

Revision History

No revisions since initial release