5X2H

Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACA PAM)

Structural Biology Knowledgebase: 5X2H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 5X2H

Classification: HYDROLASE / RNA / DNA

Total Structure Weight: 137822.22


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cas9 A 835 Campylobacter jejuni Fragment: UNP residues 1-480, 642-984
Details: CjCas9-dHNH
Gene Name(s): cas9 Cj1523c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
sgRNA B 93 Campylobacter jejuni
Target DNA strand C 28 Synthetic construct
Non-target DNA strand D 8 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 102.04 α = 90.00
b = 103.91 β = 90.00
c = 134.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-31
  • Released Date: 2017-03-29
  • Deposition author(s): Yamada, M., Watanabe, Y., Hirano, H., Nakane, T., Ishitani, R., Nishimasu, H., Nureki, O.

Revision History

No revisions since initial release