5WIF

Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 5WIF

Classification: TRANSFERASE

Total Structure Weight: 65049.13

Macromolecule Entities
Molecule Chains Length Organism Details
Spermidine N1-acetyltransferase A, B, C 184 Yersinia pestis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG5
Query on PG5

B 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
C8 H18 O4
YFNKIDBQEZZDLK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BO3
Query on BO3

C BORIC ACID
B H3 O3
KGBXLFKZBHKPEV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

C POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.188
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 102.60 α = 90.00
b = 120.11 β = 90.00
c = 122.75 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-19
  • Released Date: 2017-08-02
  • Deposition author(s): Filippova, E.V., Wawrzak, Z., Kiryukhina, O., Shatsman, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

No revisions since initial release