5W3V

Crystal Structure of macaque APOBEC3H in complex with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 5W3V

Classification: ANTIVIRAL PROTEIN / RNA

Total Structure Weight: 112154.80


Macromolecule Entities
Molecule Chains Length Organism Details
Apobec3H A 215 Macaca nemestrina Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Apobec3H B, C, D 215 Macaca nemestrina Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*AP*CP*CP*CP*GP*GP*GP*GP*A)-3') E, H 10 Synthetic construct
RNA (5'-R(P*AP*AP*CP*CP*CP*CP*GP*GP*GP*C)-3') F, G 10 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
B, C, D L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.182
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 87.96 α = 90.00
b = 89.31 β = 90.00
c = 134.37 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-08
  • Released Date: 2017-10-25
  • Deposition author(s): Bohn, J.A., Thummar, K., York, A., Raymond, A., Brown, W.C., Bieniasz, P.D., Hatziioannou, T., Smith, J.L.

Revision History

  • Version 1_0: 2017-10-25

    Type: Initial release

  • Version 1_1: 2017-11-01

    Type: Database references