5W2M

APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.250

Literature

Macromolecules
Sequence Display for 5W2M

Classification: DNA BINDING PROTEIN

Total Structure Weight: 183398.86


Macromolecule Entities
Molecule Chains Length Organism Details
DNA dC->dU-editing enzyme APOBEC-3F A, B, C..., D, J, K, L, MA, B, C, D, J, K, L, M 184 Homo sapiens EC#: 3.5.4 IUBMB
Gene Name(s): APOBEC3F Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') E, N 10 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, J, K ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.250
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 68.19 α = 79.60
b = 108.49 β = 71.80
c = 108.55 γ = 71.75

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-12-13
  • Deposition author(s): Fang, Y., Xiao, X., Li, S.-X., Wolfe, A., Chen, X.J.

Revision History

  • Version 1_0: 2017-12-13

    Type: Initial release

  • Version 1_1: 2017-12-20

    Type: Database references

  • Version 1_2: 2018-01-03

    Type: Database references