5W1Z

Crystal Structure of inosine-substituted decamer duplex DNA (I4)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 5W1Z

Classification: DNA

Total Structure Weight: 12368.10

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*(BRU)P*IP*I)-3') A, B, C, D 10 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
A, B, C, D DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 24.88 α = 90.25
b = 32.80 β = 107.32
c = 34.03 γ = 111.04

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-05
  • Released Date: 2017-08-30
  • Deposition author(s): Pallan, P.S., Egli, M.

Revision History

  • Version 1_0: 2017-08-30

    Type: Initial release

  • Version 1_1: 2017-09-13

    Type: Database references