5W0M

Structure of human TUT7 catalytic module (CM) in complex with U5 RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 5W0M

Classification: TRANSFERASE / RNA

Total Structure Weight: 139645.73


Macromolecule Entities
Molecule Chains Length Organism Details
Terminal uridylyltransferase 7 A, B, C 389 Homo sapiens EC#: 2.7.7.52 IUBMB
Fragment: nucleotidyltransferase domain (UNP residues 983-1365)
Mutation: D1060A
Gene Name(s): ZCCHC6 Gene View HS2 KIAA1711 TUT7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
U5 single-stranded RNA H, I, J 5 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B, C IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.188
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 135.47 α = 90.00
b = 135.47 β = 90.00
c = 179.27 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-31
  • Released Date: 2017-06-28
  • Deposition author(s): Faehnle, C.R., Walleshauser, J., Joshua-Tor, L.

Revision History

  • 2017-07-19
    Type: Database references