5VRV

2.05 Angstrom Resolution Crystal Structure of C-terminal Domain (DUF2156) of Putative Lysylphosphatidylglycerol Synthetase from Agrobacterium fabrum.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 5VRV

Classification: HYDROLASE OXIDOREDUCTASE

Total Structure Weight: 223299.27

Macromolecule Entities
Molecule Chains Length Organism Details
Protein regulated by acid pH A, B, C..., D, E, FA, B, C, D, E, F 330 Agrobacterium fabrum Fragment: residues 540-866
Gene Name(s): lpiA Atu2521
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 194.40 α = 90.00
b = 194.40 β = 90.00
c = 50.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-11
  • Released Date: 2017-05-24
  • Deposition author(s): Minasov, G., Wawrzak, Z., Skarina, T., Grimshaw, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release