5VPK

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 5VPK

Classification: HYDROLASE

Total Structure Weight: 76531.72

Macromolecule Entities
Molecule Chains Length Organism Details
Der f 1 variant A, B, C 223 Dermatophagoides farinae EC#: 3.4.22.65 IUBMB
Fragment: SEQUENCE DATABASE RESIDUES 99-321
Gene Name(s): DERF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 91.16 α = 90.00
b = 91.16 β = 90.00
c = 77.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-05
  • Released Date: 2017-05-24
  • Deposition author(s): Chruszcz, M., Chapman, M.D., Vailes, L.D., Pomes, A., Minor, W.
  • Previous versions:

Revision History

No revisions since initial release